Virology
TWiV 32: Influenza in silico
By Vincent Racaniello
On episode #32 of the podcast This Week in Virology, Vincent, Alan, and Raul Rabadan converse about polio survivors in iron lungs, bocavirus, structure of mimivirus, and genome sequence analysis of influenza H1N1 viruses. [powerpress url="http://traffic.libsyn.com/twiv/TWiV032.mp3"] Click the arrow above to play, or right-click to download TWiV #32 or subscribe ...
Increased fidelity reduces viral fitness
By Vincent Racaniello
We have spent over a week discussing the effects of polymerase error rates on viruses. RNA viruses have the highest error rates in nature, a property that is believed to benefit the viral population. For example, selective pressure from the immune system or antiviral drugs may lead to changes that ...
Pushing viruses over the error threshold
By Vincent Racaniello
The capacity of RNA viruses to produce prodigious numbers of mutations is a powerful advantage. But remember that selection and survival must balance genetic fidelity and mutation rate. Many mutations are not compatible with viral replication. Consequently, if mutation rates are high, at some point accumulating base changes lead to ...
Influenza A/Mexico/2009 (H1N1) – Questions & Answers
By Vincent Racaniello
Here are answers to questions sent to virology blog about the new strain of influenza H1N1 that continues to spread globally. Q: Are you aware of efforts to make the virus strain nomenclature more informative? Understanding what segments/genes are related historically and sequence wise to what is confusing using the ...
The number of possible viral variants
By Vincent Racaniello
If you have been following our discussion of quasispecies here on virology blog, you might be wondering exactly how many possible variants there are for a viral genome. The answer is quite simple: for a genome N nucleotides in length, there are 4N possible variants, because there are 4 different ...